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Structure: Internal structure identifier : 543494

The maximum agreement forest problem: Approximation algorithms and computational experiments

E. Rodrigues , M.-F. Sagot , Y. Wakabayashi
Theoretical Computer Science, 2007, 374, pp.91-110
Journal articles hal-00434715v1

Thermodynamics of Intragenic Nucleosome Ordering

G. Chevereau , L. Palmeira , C. Thermes , A. Arneodo , C. Vaillant et al.
Physical Review Letters, 2009, 103(18), pp.188-103. ⟨10.1103/PhysRevLett.103.188103⟩
Journal articles hal-00539346v1

Repetition-free longest common subsequence

S.S Adi , M. Braga , C.G. Fernandes , C.E. Ferreira , F.V. Martinez et al.
Discrete Applied Mathematics, 2010, 158 (12), pp.1315-1324. ⟨10.1016/j.dam.2009.04.023⟩
Journal articles hal-00539257v1

BaobabLUNA: the solution space of sorting by reversals

M. Braga
Bioinformatics, 2009, 25 (14), pp.1833-1835. ⟨10.1093/bioinformatics/btp285⟩
Journal articles hal-00539408v1

Current tools for the identification of miRNA genes and their targets

N.D. Mendes , A.T. Freitas , M.-F. Sagot
Nucleic Acids Research, 2009, 2009, pp.2419-2433
Journal articles hal-00539410v1

Chromosomal location effects on gene sequence evolution in mammals

G. Matassi , P.M. Sharp , Christian Gautier
Current Biology - CB, 1999, 9, pp.786-791
Journal articles hal-00428452v1

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

A. Aouacheria , V. Navratil , W. Wen , M. Jiang , Dominique Mouchiroud et al.
Oncogene, 2005, 24, pp.6133-6142. ⟨10.1038/sj.onc.1208745⟩
Journal articles hal-00427704v1
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Visualisation de données multivariées: réimplémentation des fonctionnalités graphiques de la librairie ade4

Alice Julien-Laferriere , Stéphane Dray
1ères Rencontres R, Jul 2012, Bordeaux, France
Conference papers hal-00717563v1

Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices

M.-F. Sagot , Alain Viari
Annual Symposium on Combinatorial Pattern Matching (CPM), Jun 1997, Aarhus, Denmark. pp.224-246, ⟨10.1007/3-540-63220-4_62⟩
Conference papers istex hal-00435001v1

The GC-heterogeneity of teleost fishes

C. Melodelima , Christian Gautier
BMC Genomics, 2008, 9 (1), pp.632. ⟨10.1186/1471-2164-9-632⟩
Journal articles halsde-00377984v1

Application of a temperature-dependent von Bertalanffy growth model to bullhead (Cottus gobio)

J. Kielbassa , M.L. Delignette-Müller , Didier Pont , S. Charles
Ecological Modelling, 2010, 221 (20), pp.2475-2481. ⟨10.1016/j.ecolmodel.2010.07.001⟩
Journal articles hal-02594632v1
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Pairwise Compatibility Graphs: A Survey

Tiziana Calamoneri , Blerina Sinaimeri
SIAM Review, 2016, 58 (3), pp.445 - 460. ⟨10.1137/140978053⟩
Journal articles hal-01388533v1

Somatic mosaicism underlies X-linked acrogigantism syndrome in sporadic male subjects

Adrian F. Daly , Bo Yuan , Frédéric Fina , Jean-Hubert Caberg , Giampaolo Trivellin et al.
Endocrine-Related Cancer, 2016, 23 (4), pp.221--233. ⟨10.1530/ERC-16-0082⟩
Journal articles hal-01474299v1
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On Maximal Chain Subgraphs and Covers of Bipartite Graphs

Tiziana Calamoneri , Mattia Gastaldello , Arnaud Mary , Marie-France Sagot , Blerina Sinaimeri et al.
Combinatorial Algorithms - 27th International Workshop, IWOCA 2016, Aug 2016, Helsinki, Finland. pp.137-150, ⟨10.1007/978-3-319-44543-4_11⟩
Conference papers hal-01388546v1
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A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes

Jean-Philippe Foy , Louis Bazire , Sandra Ortiz-Cuaran , Sophie Deneuve , Janice Kielbassa et al.
BMC Medicine, 2017, 15 (1), pp.703 - 719. ⟨10.1186/s12916-017-0929-y⟩
Journal articles hal-01599731v1
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How Long Does Wolbachia Remain on Board?

Marc Bailly-Bechet , Patricia Martins-Simões , Gergely Szöllősi , Gladys Mialdea , Marie-France Sagot et al.
Molecular Biology and Evolution, 2017, 34 (5), pp.1183 - 1193. ⟨10.1093/molbev/msx073⟩
Journal articles hal-01524867v1
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Efficient Enumeration of Solutions Produced by Closure Operations

Arnaud Mary , Yann Strozecki
33rd Symposium on Theoretical Aspects of Computer Science, STACS 2016, Feb 2016, Orléans, France. ⟨10.4230/LIPIcs.STACS.2016.52⟩
Conference papers hal-01388505v1

Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

Mariana G. Ferrarini , Franciele M. Siqueira , Scheila G. Mucha , Tony Lionel Palama , Elodie Jobard et al.
BMC Genomics, 2016, 17 (1), pp.353. ⟨10.1186/s12864-016-2644-z⟩
Journal articles hal-01315893v1
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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

Marcel Smid , F. Germán Rodríguez-González , Anieta M. Sieuwerts , Roberto Salgado , Wendy J. C. Prager-van Der Smissen et al.
Nature Communications, 2016, 7, ⟨10.1038/ncomms12910⟩
Journal articles hal-01388445v1
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A multiple layer model to compare RNA secondary structures

Julien Allali , Marie-France Sagot
Software: Practice and Experience, 2008, 38 (8), pp.775-792
Journal articles hal-00306662v1
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The Gapped-Factor Tree

Pierre Peterlongo , Julien Allali , Marie-France Sagot
Prague Stringology Conference 2006, 2006, Prague, Czech Republic. pp.182--196
Conference papers hal-00306572v1
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Longest Motifs with a Functionally Equivalent Central Block

Maxime Crochemore , Raffaele Giancarlo , Marie-France Sagot
SPIRE'2004, Oct 2004, Padova, Italy. pp.298-309, ⟨10.1007/978-3-540-30213-1_42⟩
Conference papers hal-00619978v1

Object-oriented knowledge bases for the analysis of prokaryotic and eukaryotic genomes

G. Perrière , F. Dorkeld , F. Rechenmann , Christian Gautier
In Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993, 1, pp.319-327
Journal articles hal-00698136v1

Models and algorithms for metabolic networks: elementary modes and precursor sets

Vicente Acuña
incollection, 2010, --, pp.173-179
Journal articles hal-00698452v1
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Short and long-term genome stability analysis of prokaryotic genomes

Matteo Brilli , Pietro Liò , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2013, 14 (1), pp.309. ⟨10.1186/1471-2164-14-309⟩
Journal articles hal-00834426v1
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CALDERA: Finding all significant de Bruijn subgraphs for bacterial GWAS

Hector Roux de Bézieux , Leandro Lima , Fanny Perraudeau , Arnaud Mary , Sandrine Dudoit et al.
Journal articles hal-03433563v1
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A new distance for high level RNA secondary structure comparison

Julien Allali , Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2005, 2, pp.3--14
Journal articles hal-00306658v1
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De novo algorithms to identify patterns associated with biological events in de Bruijn graphs built from NGS data

Leandro Ishi Soares de Lima
Bioinformatics [q-bio.QM]. Université de Lyon; Università degli studi di Roma "Tor Vergata" (1972-..), 2019. English. ⟨NNT : 2019LYSE1055⟩
Theses tel-02280110v1
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Advances in Analyzing Virus-Induced Alterations of Host Cell Splicing

Usama Ashraf , Clara Benoit-Pilven , Vincent Lacroix , Vincent Navratil , Nadia Naffakh et al.
Trends in Microbiology, 2019, 27 (3), pp.268-281. ⟨10.1016/j.tim.2018.11.004⟩
Journal articles hal-01964983v1
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Bioinformatic study of the metabolic dialog between a non-pathogenic trypanosomatid and its endosymbiont with evolutionary and functional goals

Cecilia Coimbra Klein
Quantitative Methods [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. English. ⟨NNT : 2013LYO10208⟩
Theses tel-01050338v1