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The maximum agreement forest problem: Approximation algorithms and computational experiments
E. Rodrigues
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M.-F. Sagot
,
Y. Wakabayashi
Theoretical Computer Science, 2007, 374, pp.91-110
Journal articles
hal-00434715v1
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Thermodynamics of Intragenic Nucleosome Ordering
G. Chevereau
,
L. Palmeira
,
C. Thermes
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A. Arneodo
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C. Vaillant
et al.
Journal articles
hal-00539346v1
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Repetition-free longest common subsequence
S.S Adi
,
M. Braga
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C.G. Fernandes
,
C.E. Ferreira
,
F.V. Martinez
et al.
Journal articles
hal-00539257v1
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BaobabLUNA: the solution space of sorting by reversals
M. Braga
Journal articles
hal-00539408v1
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Current tools for the identification of miRNA genes and their targets
N.D. Mendes
,
A.T. Freitas
,
M.-F. Sagot
Nucleic Acids Research, 2009, 2009, pp.2419-2433
Journal articles
hal-00539410v1
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Chromosomal location effects on gene sequence evolution in mammals
G. Matassi
,
P.M. Sharp
,
Christian Gautier
Current Biology - CB, 1999, 9, pp.786-791
Journal articles
hal-00428452v1
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In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant
A. Aouacheria
,
V. Navratil
,
W. Wen
,
M. Jiang
,
Dominique Mouchiroud
et al.
Journal articles
hal-00427704v1
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Visualisation de données multivariées: réimplémentation des fonctionnalités graphiques de la librairie ade4
Alice Julien-Laferriere
,
Stéphane Dray
1ères Rencontres R, Jul 2012, Bordeaux, France
Conference papers
hal-00717563v1
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Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices
M.-F. Sagot
,
Alain Viari
Conference papers
istex
hal-00435001v1
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The GC-heterogeneity of teleost fishes
C. Melodelima
,
Christian Gautier
Journal articles
halsde-00377984v1
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Application of a temperature-dependent von Bertalanffy growth model to bullhead (Cottus gobio)
J. Kielbassa
,
M.L. Delignette-Müller
,
Didier Pont
,
S. Charles
Journal articles
hal-02594632v1
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Pairwise Compatibility Graphs: A Survey
Tiziana Calamoneri
,
Blerina Sinaimeri
Journal articles
hal-01388533v1
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Somatic mosaicism underlies X-linked acrogigantism syndrome in sporadic male subjects
Adrian F. Daly
,
Bo Yuan
,
Frédéric Fina
,
Jean-Hubert Caberg
,
Giampaolo Trivellin
et al.
Journal articles
hal-01474299v1
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On Maximal Chain Subgraphs and Covers of Bipartite Graphs
Tiziana Calamoneri
,
Mattia Gastaldello
,
Arnaud Mary
,
Marie-France Sagot
,
Blerina Sinaimeri
et al.
Conference papers
hal-01388546v1
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A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes
Jean-Philippe Foy
,
Louis Bazire
,
Sandra Ortiz-Cuaran
,
Sophie Deneuve
,
Janice Kielbassa
et al.
Journal articles
hal-01599731v1
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How Long Does Wolbachia Remain on Board?
Marc Bailly-Bechet
,
Patricia Martins-Simões
,
Gergely Szöllősi
,
Gladys Mialdea
,
Marie-France Sagot
et al.
Journal articles
hal-01524867v1
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Efficient Enumeration of Solutions Produced by Closure Operations
Arnaud Mary
,
Yann Strozecki
Conference papers
hal-01388505v1
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Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling
Mariana G. Ferrarini
,
Franciele M. Siqueira
,
Scheila G. Mucha
,
Tony Lionel Palama
,
Elodie Jobard
et al.
Journal articles
hal-01315893v1
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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration
Marcel Smid
,
F. Germán Rodríguez-González
,
Anieta M. Sieuwerts
,
Roberto Salgado
,
Wendy J. C. Prager-van Der Smissen
et al.
Journal articles
hal-01388445v1
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A multiple layer model to compare RNA secondary structures
Julien Allali
,
Marie-France Sagot
Software: Practice and Experience, 2008, 38 (8), pp.775-792
Journal articles
hal-00306662v1
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The Gapped-Factor Tree
Pierre Peterlongo
,
Julien Allali
,
Marie-France Sagot
Prague Stringology Conference 2006, 2006, Prague, Czech Republic. pp.182--196
Conference papers
hal-00306572v1
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Longest Motifs with a Functionally Equivalent Central Block
Maxime Crochemore
,
Raffaele Giancarlo
,
Marie-France Sagot
Conference papers
hal-00619978v1
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Object-oriented knowledge bases for the analysis of prokaryotic and eukaryotic genomes
G. Perrière
,
F. Dorkeld
,
F. Rechenmann
,
Christian Gautier
In Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993, 1, pp.319-327
Journal articles
hal-00698136v1
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Models and algorithms for metabolic networks: elementary modes and precursor sets
Vicente Acuña
incollection, 2010, --, pp.173-179
Journal articles
hal-00698452v1
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Short and long-term genome stability analysis of prokaryotic genomes
Matteo Brilli
,
Pietro Liò
,
Vincent Lacroix
,
Marie-France Sagot
Journal articles
hal-00834426v1
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CALDERA: Finding all significant de Bruijn subgraphs for bacterial GWAS
Hector Roux de Bézieux
,
Leandro Lima
,
Fanny Perraudeau
,
Arnaud Mary
,
Sandrine Dudoit
et al.
Journal articles
hal-03433563v1
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A new distance for high level RNA secondary structure comparison
Julien Allali
,
Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2005, 2, pp.3--14
Journal articles
hal-00306658v1
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De novo algorithms to identify patterns associated with biological events in de Bruijn graphs built from NGS data
Leandro Ishi Soares de Lima
Bioinformatics [q-bio.QM]. Université de Lyon; Università degli studi di Roma "Tor Vergata" (1972-..), 2019. English. ⟨NNT : 2019LYSE1055⟩
Theses
tel-02280110v1
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Advances in Analyzing Virus-Induced Alterations of Host Cell Splicing
Usama Ashraf
,
Clara Benoit-Pilven
,
Vincent Lacroix
,
Vincent Navratil
,
Nadia Naffakh
et al.
Journal articles
hal-01964983v1
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Bioinformatic study of the metabolic dialog between a non-pathogenic trypanosomatid and its endosymbiont with evolutionary and functional goals
Cecilia Coimbra Klein
Quantitative Methods [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. English. ⟨NNT : 2013LYO10208⟩
Theses
tel-01050338v1
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