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Mapping DNA replication with nanopore sequencing

Magali Hennion , Jean-Michel Arbona , Corinne Cruaud , Florence Proux , Benoît Le Tallec et al.
Other publications hal-02410486v1

Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint

Olivier Hyrien , Diletta Ciardo , Olivier Haccard , Hemalatha Narassimprakash , Jean-Michel Arbona et al.
2020
Preprints, Working Papers, ... hal-03052966v1
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Functional analysis of a de novo variant in the neurodevelopment and generalized epilepsy disease gene NBEA

Thomas Boulin , Omar Itani , Sonia El Mouridi , Alice Leclercq-Blondel , Marie Gendrel et al.
Molecular Genetics and Metabolism, 2021, ⟨10.1016/j.ymgme.2021.07.013⟩
Journal articles hal-03357611v1

FORK-seq: single molecule profiling of DNA replication

Magali Hennion , Bertrand Theulot , Jean-Michel Arbona , B. Audit , Olivier Hyrien et al.
Yeast functional genomics: Methods and Protocols, 2477, , pp.107-128, 2022, Methods in Molecular Biology
Book sections hal-03454731v1

Toward universal forward genetics: using a draft genome sequence of the nematode oscheius tipulae to identify mutations affecting vulva development

Fabrice Besnard , Georgios Koutsovoulos , Sana Dieudonne , Mark Blaxter , Marie-Anne Félix et al.
Genetics, 2017, 206 (4), pp.1747-1761. ⟨10.1534/genetics.117.203521⟩
Journal articles hal-01595198v1

Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling

L. Orliaguet , T. Ejlalmanesh , A. Humbert , R. Ballaire , M. Diedisheim et al.
Nature Communications, 2022, 13 (1), pp.5089. ⟨10.1038/s41467-022-32813-z⟩
Journal articles hal-03770463v1
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Molecular insights into the origin of the Hox-TALE patterning system

Bruno Hudry , Morgane Thomas-Chollier , Yael Volovik , Marilyne Duffraisse , Amélie Dard et al.
Journal articles hal-03352057v1
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Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Brian P. Cusack , Peter F. Arndt , L. Duret , Hugues Roest Crollius
PLoS Genetics, 2011, 7 (10), pp.e1002276. ⟨10.1371/journal.pgen.1002276⟩
Journal articles inserm-00711772v1
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Genome-wide mapping of individual replication fork velocities using nanopore sequencing

Bertrand Theulot , Laurent Lacroix , Jean-Michel Arbona , Gael A Millot , Etienne Jean et al.
Nature Communications, 2022, 13 (1), pp.3295. ⟨10.1038/s41467-022-31012-0⟩
Journal articles pasteur-03693859v1

mwmorph : an R package for fitting multivariate evolutionary models to morphometric data

Julien Clavel , Gilles Escarguel , Gildas Merceron
Methods in Ecology and Evolution, 2015, 6 (11), pp.1311-1319. ⟨10.1111/2041-210.12420⟩
Journal articles hal-01271833v1
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Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

Anna Niarakis , Martin Kuiper , Marek Ostaszewski , Rahuman Malik Sheriff , Cristina Casals-Casas et al.
Briefings in Bioinformatics, 2021, 22 (2), pp.1848--1859. ⟨10.1093/bib/bbaa046⟩
Journal articles hal-02549796v1
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Diversification and hybrid incompatibility in auto-pseudogamous species of Mesorhabditis nematodes

Caroline Launay , Marie-Anne Félix , Joris Dieng , Marie Delattre
BMC Evolutionary Biology, 2020, 20 (1), pp.105. ⟨10.1186/s12862-020-01665-w⟩
Journal articles inserm-02972247v1
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Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats

Julien Clavel , Hélène Morlon
Systematic Biology, 2020, 69 (5), pp.927-943. ⟨10.1093/sysbio/syaa010⟩
Journal articles hal-02505243v1

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

Baptiste Saudemont , Alexandra Popa , Joanna Parmley , Vincent Rocher , Corinne Blugeon et al.
Genome Biology, 2017, 18 (1), ⟨10.1186/s13059-017-1344-6⟩
Journal articles hal-02321589v1

Genome-defence small RNAs exapted for epigenetic mating-type inheritance.

Deepankar Pratap Singh , Baptiste Saudemont , Gérard Guglielmi , Olivier Arnaiz , Jean-François Goût et al.
Stem Cells and Development, 2014, 509 (7501), pp.447-52. ⟨10.1038/nature13318⟩
Journal articles hal-01015302v1

Assessing marine biotechnology research centres in peripheral regions: developing global and local STI indicators

Douglas K. R. Robinson , Antoine Schoen , Patricia Laurens , Suzel Horellou , Pierre Colas et al.
STI2016 - Proceedings of the 21ST international conference on science and technology indicators, Sep 2016, Valencia, Spain. ⟨10.4995/STI2016.2016.4543⟩
Conference papers hal-01704087v1
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Discovery of a genetic module essential for assigning left-right asymmetry in humans and ancestral vertebrates

E. Szenker-Ravi , T. Ott , M. Khatoo , A. M. De Bellaing , W. X. Goh et al.
Nature Genetics, 2022, 54 (1), pp.62-72. ⟨10.1038/s41588-021-00970-4⟩
Journal articles inserm-03752860v1

Cell Type-Specific Profiling of Chromatin Modifications and Associated Proteins

Ana Karina Morao , Erwann E. Caillieux , Vincent Colot , François Roudier
Plant Chromatin Dynamics, pp.111-130, 2018, ⟨10.1007/978-1-4939-7318-7_8⟩
Book sections hal-03142782v1
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Insights into vertebrate whole-genome duplications from the rainbow trout genome

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard et al.
22. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jun 2014, Puerto Rico, Puerto Rico. 2014, Smbe 2014. Molecular Evolution: From Genome Technology to the History of Life
Conference poster hal-01194063v1
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Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

France Denoeud , Simon Henriet , Sutada Mungpakdee , Jean-Marc Aury , Corinne da Silva et al.
Science, 2010, 330 (6009), pp.1381-1385. ⟨10.1126/science.1194167⟩
Journal articles halsde-00544648v1
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An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids

Karla Fabiola Corral-Jara , Laura Cantini , Nathalie Poupin , Tao Ye , Jean-Paul Rigaudière et al.
Nutrients, 2020, 12 (12), pp.3864. ⟨10.3390/nu12123864⟩
Journal articles hal-03100700v1

FRET Image Correlation Spectroscopy Reveals RNAPII-Independent P-TEFb Recruitment on Chromatin

Gabriel Bidaux , Corentin Le Nézet , Mariano Gonzalez Pisfil , Mélanie Henry , Alessandro Furlan et al.
Biophysical Journal, 2018, 114 (3), pp.522-533. ⟨10.1016/j.bpj.2017.11.3783⟩
Journal articles hal-02413911v1

Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function

Souraya Khouider , Filipe Borges , Chantal Leblanc , Alexander Ungru , Arp Schnittger et al.
Nature Communications, 2021, 12 (1), pp.e202000848. ⟨10.1038/s41467-020-20606-1⟩
Journal articles hal-03458757v1

Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths

Jean-Michel Arbona , Hadi Kabalane , Arach Goldar , Olivier Hyrien , Benjamin Audit et al.
2022
Preprints, Working Papers, ... hal-03764550v1
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A broad mutational target explains a fast rate of phenotypic evolution

Fabrice Besnard , Joao Picao-Osorio , Clément Dubois , Marie-Anne Felix
Journal articles hal-03046955v1
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

Diamantis Sellis , Frédéric Guérin , Olivier Arnaiz , Walker Pett , Emmanuelle Lerat et al.
Plos Biology, 2021, 19 (7), pp.e3001309. ⟨10.1371/journal.pbio.3001309⟩
Journal articles hal-03366429v1
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Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species

Natalia Sawka-Gądek , Alexey Potekhin , Deepankar Pratap Singh , Inessa Grevtseva , Olivier Arnaiz et al.
Genome Biology and Evolution, 2020, evaa258, ⟨10.1093/gbe/evaa258⟩
Journal articles hal-03102341v1

Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans

M. Boccara , Y. Fedala , C. Bryan Venien , M. Bailly-Bechet , C. Bowler et al.
Biomedical optics express, 2016, 7, pp.3736. ⟨10.1364/boe.7.003736⟩
Journal articles hal-02016385v1

CAG repeat size in Huntingtin alleles is associated with cancer prognosis

Morgane Sonia Thion , Sophie Tézenas Du Montcel , Jean-Louis Golmard , Sophie Vacher , Laure Barjhoux et al.
European Journal of Human Genetics, 2016, 24 (9), pp.1310-1315. ⟨10.1038/ejhg.2016.13⟩
Journal articles hal-03413269v1
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Accelerated body size evolution during cold climatic periods in the Cenozoic

Julien Clavel , Hélène Morlon
Proceedings of the National Academy of Sciences of the United States of America, 2016, 114, pp.4183 - 4188. ⟨10.1073/pnas.1606868114⟩
Journal articles hal-03721200v1